PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G247000.1.p
Common NameGLYMA_06G247000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 219aa    MW: 24758.2 Da    PI: 6.3484
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G247000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1385.3e-1260149189
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 
                          +fYn++Ak+ GF +r+++sk +     ++   f C  + k ++  +k       +++r+  + +t+C+a+l++++ +  ++w++++++++
  Glyma.06G247000.1.p  60 EFYNSFAKKNGFGIRIQSSKPK-----MVFLIFFCEGQHKVKSLVDKdthdnICQSKRNCLTLQTSCQASLTISRGDiASNWVIKSFSND 144
                          6****************98887.....788899999888877665555666567788889999*************************** PP

                 FAR1  85 HnHel 89 
                           nH +
  Glyma.06G247000.1.p 145 DNHVM 149
                          ***87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.7E-1060149IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MADTLSNIET QEIESINVMP MDTPISFEEV MPGDASNDAE EMNIQPCLGL EFESLEKVIE  60
FYNSFAKKNG FGIRIQSSKP KMVFLIFFCE GQHKVKSLVD KDTHDNICQS KRNCLTLQTS  120
CQASLTISRG DIASNWVIKS FSNDDNHVML NPKSVCYMRC HKKMSVPAQS LVEKFEEEGL  180
PTRKVASIFN NGDSSFSNKD CWNHIRNLRR KNLDIGRC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0R0JTK11e-163A0A0R0JTK1_SOYBN; Uncharacterized protein
STRINGGLYMA15G20510.21e-116(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1579835
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-20FAR1-related sequence 5